Publications

2012

Bagchi R, Salehin M, Adeyemo OS, Salazar C, Shulaev V, Sherrier DJ, Dickstein R. (2012) Functional assessment of the Medicago NIP/LATD protein demonstrates that it is a high affinity nitrate transporter. Plant Physiol. 2012 Aug 2. [Epub ahead of print] PubMed FREE-Full-Text

Veilleux RE, Mills KP, Baxter AJ, Upham KT, Ferguson TJ, Holt SH, Lu N, Ruiz-Rojas JJ, Pantazis CJ, Davis CM, Lindsay RC, Powell FL, Dan Y, Dickerman AW, Oosumi T, Shulaev V. (2012) Transposon tagging in diploid strawberry. Plant Biotechnol J. doi: 10.1111/j.1467-7652.2012.00728.x. [Epub ahead of print]  PubMed Full-Text

Salazar C, Armenta JM, Shulaev V (2012) An UPLC-ESI-MS/MS Assay Using 6-Aminoquinolyl-N-Hydroxysuccinimidyl Carbamate Derivatization for Targeted Amino Acid Analysis: Application to Screening of Arabidopsis thaliana Mutants. Metabolites 2012, 2(3), 398-428; doi:10.3390/metabo2030398 FREE-Full-Text

Horn PJ, Korte AR, Neogi PB, Love E, Fuchs J, Strupat K, Borisjuk L, Shulaev V, Lee YJ, Chapman KD. (2012) Spatial mapping of lipids at cellular resolution in embryos of cotton. Plant Cell, 24(2):622-636 PubMed Full-Text FREE-Full-Text

Quanbeck SM, Brachova L,. Campbell AA, Guan X, Perera A, He K, Rhee SY, Bais P, Dickerson JA, Philip Dixon  P, Wohlgemuth G, Fiehn O, Barkan L, Lange I, Lange BM, Lee I, Cortes D, Salazar C, Shuman  J, Shulaev V, Huhman DV, Sumner LW, Roth MR, Welti R, Ilarslan H, Wurtele ES, Nikolau BJ (2012) Metabolomics as a hypothesis-generating functional genomics tool for the annotation of Arabidopsis thaliana genes of “unknown function” .  Frontiers Techn Adv Plant Sci. 3-Art 15 PubMed Full-Text

Jung S, Cestaro A, Troggio M, Main D, Zheng P, Cho I, Folta KM, Sosinski B, Abbott A, Celton JM, Arús P, Shulaev V, Verde I, Morgante M, Rokhsar D, Velasco R, Sargent DJ. (2012) Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies. BMC Genomics. 4;13:129. PubMed Full-Text FREE-Full-Text

Salazar C, Armenta GM, Cortés DF, Shulaev V (2012) Combination of an AccQ·Tag-Ultra Performance Liquid Chromatographic Method with Tandem Mass Spectrometry for the Analysis of Amino Acids. Methods Mol Biol. 828:13-28. PubMedFull-text.
 
2011

Sargent DJ, Kuchta P, Girona EL, Zhang H, Davis TM, Celton JM, Marchese A, Korbin M, Folta KM, Shulaev V, Simpson DW (2011) SSR marker development and mapping targeted to previously unmapped regions of the strawberry (Fragaria vesca L.) genome sequence. The Plant Genome. 4: 3: 165-177

Blekherman G, Laubenbacher R, Cortes DF, Mendes P, Torti FM, Akman S, Torti SV, Shulaev V (2011) Bioinformatics tools for cancer metabolomics. Metabolomics. 7:329-343. PubMed. Full-text.
 
Veilleux, R.E., Oosumi, T., Wadl, P.A., Baxter, A.J., Holt, S.H., Ruiz-Rojas, J.J., Pattison, J., Flinn, B., Yinghui Dan, Nessler, C. and Shulaev, V. (2011)  Insertional mutagenesis in the diploid strawberry (Fragaria vesca). Acta Hort. 941:49-54. ISHS.
 
Suzuki N, Miller G, Morales J, Shulaev V, Torres MA, Mittler R.  (2011) Respiratory burst oxidases: the engines of ROS signaling. Curr Opin Plant Biol. 14(6):691-699. PubMed. Full-text.
 
Katz E, Boo KH, Kim HY, Eigenheer RA, Phinney BS, Shulaev V, Negre-Zakharov F, Sadka A, Blumwald E. (2011) Label-free shotgun proteomics and metabolite analysis reveal a significant metabolic shift during citrus fruit development. J Exp Bot. 2011 62(15):5367-5384. PubMed. Full-text.
 
Nesterov VV, Sarkisov SS, Shulaev V, Nesterov VN. (2011)  1-Benzyl-3,5-bis-(4-chloro-benzyl-idene)piperidin-4-one. Acta Crystallogr Sect E Struct Rep Online. 67(Pt 6):o1505-6. PubMed. Full-text.
 
Nesterov VV, Sarkisov SS, Shulaev V, Nesterov VN. (2011) 3,5-Bis(4-chloro-benzyl-idene)-1-methyl-piperidin-4-one. Acta Crystallogr Sect E Struct Rep Online. 67(Pt 4):o760-1. PubMedFull-text.
 
Mittler R, Vanderauwera S, Suzuki N, Miller G, Tognetti VB, Vandepoele K, Gollery M, Shulaev V, Van Breusegem F. (2011) ROS signaling: the new wave?  Trends Plant Sci. 16(6):300-309. PubMed. Full-text.
 
Cortes DF, Sha W, Hower V, Blekherman G, Laubenbacher R, Akman S, Torti SV, Shulaev V. (2011) Differential gene expression in normal and transformed human mammary epithelial cells in response to oxidative stress. Free Radic Biol Med. 50:1565-1574. PubMed. Full-text.
 
Cheema AK, Timofeeva OA, Varghese RS, Dimtchev A, Sheikh KD, Shulaev V, Suy S, Collins S, Ressom HW, Jung M, Dritschilo A (2011) Integrated analysis of ATM mediated gene and protein expression impacting cellular metabolism.  J Proteome Res.  10:2651-2657. PubMed. Full-text.
 
Vanderauwera S, Suzuki N, Miller G, van de Cotte B, Morsa S, Ravanat JL, Hegie A, Triantaphylidès C, Shulaev V, Van Montagu MC, Van Breusegem F, Mittler R  (2011)  Extranuclear protection of chromosomal DNA from oxidative stress. Proc Natl. Acad. Sci. USA 108:1711-1716. PubMed. Full-text.
 
Bajad S, Shulaev V. (2011) LC-MS-Based Metabolomics. Methods Mol Biol. 708:213-228. PubMed. Full-text.
 
Shuman JL, Cortes DF, Armenta JM, Pokrzywa RM, Mendes P, Shulaev V (2011) Plant metabolomics by GC-MS and differential analysis. Methods Mol Biol. 678:229-246. PMID: 20931384. PubMed. Full-text.
 
Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, et. al., (2011) The genome of woodland strawberry (Fragaria vesca). Nat Genet. 43:109-116. PubMed. Full-text.
 
2010
Rojo LE, Villano CM, Joseph G, Schmidt B, Shulaev V, Shuman JL, Lila MA, Raskin I. (2010) Original Contribution: Wound-healing properties of nut oil from Pouteria lucuma. J Cosmet Dermatol. 9:185-195. PubMed.
 
Oosumi, T, Ruiz-Rojas, JJ, Veilleux, RE, Dickerman, A, Shulaev V (2010) Implementing reverse genetics in Rosaceae: analysis of T-DNA flanking sequences of insertional mutant lines in the diploid strawberry, Fragaria vesca. Physiol Plant. 140:1-9. PubMed. Full-text.
           
Sumugat,  M. R.; J. L. Donahue; D. F. Cortes; V. K. Stromberg; R. Grene; V. Shulaev; G. E. Welbaum (2010) Seed Development and Germination in an Arabidopsis thaliana line antisense to glutathione reductase 2. Journal of New Seeds, 1522-9025, 11: 104 – 126.
 
Bais, P, Moon, SM, Kun He, K, Leitao, R, Dreher, K, Walk, T, Sucaet, Y, Barkan, L, Wohlgemuth, G, Roth, MR, Syrkin Wurtele, E, Dixon, P, Fiehn, O, Lange, BM, Shulaev, V, Sumner, LW,  Welti, R, Nikolau, BJ, Rhee, SY, Dickerson, JA (2010) PlantMetabolomics.org: A web portal for Plant Metabolomics. Plant Physiol. 152:1807-1816. PubMed. Full-text.
 
2009

Armenta, JM, Cortes, DF, Pisciotta, JM, Shuman, JL, Blakeslee, K, Rasoloson, D, Ogunbiyi, O, Sullivan, DJ, Shulaev, V (2009) Sensitive and rapid method for amino acid quantitation in malaria biological samples using AccQ*Tag ultra performance liquid chromatography-electrospray ionization-MS/MS with multiple reaction monitoring.  Anal Chem., 82: 548-558. PubMed. Full-text.
 
Tripathi, AK, Sha, W, Shulaev, V, Stins, MF, Sullivan, DJ Jr. (2009). Plasmodium falciparum-infected erythrocytes induce NF-kappaB regulated inflammatory pathways in human cerebral endothelium. Blood, 114:4243-4252. PubMed. Full-text.
 
Miller, G, Schlauch, K, Tam, R, Cortes, D, Torres, MA, Shulaev, V, Dangl, JL, Mittler, R (2009)  The plant NADPH oxidase RBOHD mediates rapid systemic signaling in response to diverse stimuli. Sci. Signal., 2(84):ra45. PubMed. Full-text.
 
Laubenbacher,  R, Hower, V, Jarrah, A, Torti, SV, Shulaev, V, Mendes, P, Torti, FM, Akman, S. (2009) A systems biology view of cancer. Biochim Biophys Acta. 1796:129-139. PMCID: PMC2782452. PubMed. Full-text.
 
Rivero, RM, Shulaev, V, Blumwald, E (2009) Cytokinin-dependent photorespiration and the protection of photosynthesis during water deficit. Plant Physiol. 150:1530-1534. PMCID: PMC2705023. PubMed. Full-text.
 
Hower, V, Mendes, P, Torti, FM,  Laubenbacher, R, Akman, S, Shulaev, V,  Torti, SV (2009) A general map of iron metabolism and tissue-specific subnetworks. Molecular BioSystems. 5:422-423.  PMCID: PMC2680238. PubMed. Full-text.
 
Gasic, K, Han, Y, Kertbundit, S, Shulaev, V, Iezzoni, AF, Stover, EW, Bell, RL, Wisniewski, ME, Korban, SS. (2009) Transferability of apple EST-derived SSRs to other Rosaceae species. Mol. Breeding 23: 397-411
 
2008

Sosinski, B, Shulaev, V, Dhingra, A, Kalyanaraman, A, Bumgarner, R, Rokhsar, D, Verde, I, Velasco, R, and Abbott, AG (2008) Rosaceous genome sequencing: Perspectives and progress. In: Genetics and Genomics of Rosaceae, Kevin M. Folta and Susan E. Gardiner, eds., Springer, New York, NY.
 
Koussevitzky, S, Suzuki, N, Huntington, S, Armijo, L, Sha, W, Cortes, D, Shulaev, V, Mittler R  (2008) Ascorbate peroxidase 1 plays a key role in the response of Arabidopsis thaliana to stress combination. J. Biol. Chem. 283:34197-34203. PubMed. Full-text.
 
Ng, C, Coppens, I, Govindarajan, D, Pisciotta, J, Shulaev, V, Griffin, D (2008) Effect of host cell lipid metabolism on alphavirus replication, virion morphogenesis and infectivity. Proc. Natl. Acad. Sci. USA 105:16326-16331. PubMed. Full-text.
 
Miller, G, Courtu, J, Shulaev, V, Mittler, R (2008) Reactive oxygen signaling in plants. In: Annual Plant Reviews, V. 33, Intracellular Signaling in Plants. Zhenbiao Yang, Ed. Blackwell Publishing, Oxford, pp. 189-201.
 
Shulaev, V, Korban, KS, Sosinski, B, Abbott, AG, Aldwinckle, HS, Folta, KM, Iezzoni, A, Main, D, Arús, P, Dandekar, AM, Lewers, K, Brown, SK, Davis, TM, Gardiner, SE, Potter, D, Veilleux, RE (2008) Multiple models for Rosaceae genomics. Plant Physiol. 147:985-1003. PubMed. Full-text.
 
Miller, G, Shulaev, V, Mittler, R (2008) Reactive oxygen signaling and abiotic stress. Physiol. Plant. 133:481-489. PubMed. Full-text.
 
Shulaev, V, Cortes, D, Miller, G, Mittler, R (2008) Metabolomics for plant stress response. Physiol. Plant. 132:199-208. PubMed. Full-text.
 
Suzuki, N, Bajad, S, Shuman, J, Shulaev, V, Mittler R. (2008) The transcriptional co-activator MBF1c is a key regulator of thermotolerance in Arabidopsis thaliana. J. Biol. Chem. 283:9269-9275. PubMed. Full-text.
 
Martins, AM, Sha, W, Evans, C, Martino-Catt, S, Mendes, P, Shulaev, V (2007) Comparison of sampling techniques for parallel analysis of transcript and metabolite levels in Saccharomyces cerevisiae. Yeast 24:181-188. PubMed. Full-text.
 
Bajad, S, Shulaev, V. (2007) Highly-parallel metabolomics approaches using LC-MS2 for pharmaceutical and environmental analysis. TRAC-Trends Anal. Chem. 26:625-636. PubMed. Full-text.
 
Varbanova, M, Yamaguchi, S, Yang, Y, McKelvey, K, Hanada, A, Borochov, R, Yu, F, Jikumaru, Y, Ross, J, Cortes, D*, Ma, CJ, Noel, JP, Mander, L,  Shulaev, V, Kamiya, Y, Rodermel, S, Weiss, D, Pichersky, E (2007) Methylation of gibberellins by Arabidopsis GAMT1 and GAMT2. Plant Cell 19:32-45. PubMed. Full-text.
 
Yang, Y, Varbanova, M, Ross, J, Wang, G, Cortes, D*, Fridman, F, Shulaev,V, Noel, JP, Pichersky, E. (2006) Methylation and demethylation of plant signal molecules. In: Integrative plant biochemistry – Recent Advances in Phytochemistry, v 40, J, Romeo, ed., Elsevier
 
Pisciotta, JM, Coppens, I, Tripathi, AK, Scholl, PF, Shuman, J*, Bajad, S, Shulaev, V, Sullivan, DJ Jr (2007) The role of neutral lipid nanospheres in Plasmodium falciparum haem crystallization. Biochem. J. 402:197-204. PubMed. Full-text.
 
Shulaev, V (2006) Metabolomics technology and bioinformatics. Brief. Bioinform.. 7:128-139. PubMed. Full-text.
 
Shulaev, V, Oliver, DJ (2006) Metabolic and proteomic markers for oxidative stress. New tools for reactive oxygen species research. Plant Physiol. 141:367-372. PubMed. Full-text.
 
Gadjev, I, Vanderauwera, S, Gechev, T.S., Laloi, C, Minkov, IN, Shulaev, V, Apel, K, Inze, D, Mittler, R, Van Breusegem, F (2006) Transcriptomic footprints disclose specificity of reactive oxygen species signaling in Arabidopsis. Plant Physiol. 141:436-445. PubMed. Full-text.
 
Shimada, T, Nakano, R, Shulaev, V, Sadka, A, Blumwald, E (2006) Vacuolar citrate/H(+) symporter of citrus juice cells. Planta 224:472-480. PubMed. Full-text.
 
Oosumi, T, Gruszewski, HA, Blischak, LA, Baxter, AJ, Wadl, PA, Shuman, JL, Veilleux, RE, Shulaev, V (2006) High-efficiency transformation of the diploid strawberry (Fragaria vesca) for functional genomics. Planta 223:1219-1230. PubMed. Full-text.
 
Suzuki, N, Rizhsky, L, Liang, H, Shuman, J, Shulaev, V, Mittler, R  (2005) Enhanced tolerance to environmental stress in transgenic plants expressing the transcriptional coactivator multiprotein bridging factor 1c. Plant Physiol. 139:1313-1322. PubMed. Full-text.
 
Davletova, S, Rizhsky, L, Liang, H, Shengqiang, Z, Oliver, DJ, Coutul, J, Shulaev, V, Schlauch, K, Mittler, R (2005) Cytosolic ascorbate peroxidase  is a central component of the reactive oxygen gene network of Arabidopsis. Plant Cell 17:268-281. PubMed. Full-text.
 
Martins, A, Camacho, D, Shuman, J, Sha, W, Mendes, P, Shulaev, V (2004)  A systems biology study of two distinct growth phases of Saccharomyces cerevisiae cultures. Current Genomics 5:649-663.
 
Rizhsky, L, Shulaev, V, Mittler, R (2004) Measuring programmed cell death in plants. Methods Mol. Biol. 282:179-189. PubMed. Full-text.
 
Rizhsky, L, Liang, H, Shuman J*, Shulaev, V, Davletova, S, Mittler, R (2004) When defense pathways collide: The response of Arabidopsis to a combination of drought and heat stress. Plant Physiol. 134:1683-1696. PubMed. Full-text.
 
Nowak, J, Shulaev, V (2003) Priming for transplant stress resistance in in vitro propagation.  In Vitro Cell Dev. Biol. – Plant 39:107-124.
 
Mittler, R., and Shulaev, V (2003) Programmed cell death in plants: future perspectives, applications, and methods. In: “When Plant Cells Die” (J. Gray, ed.), Sheffield Academic Press
 
Mittler, R, and Shulaev, V (2002) Cell death in plant, yeast and bacterium In: Essentials of Apoptosis: A Guide for Basic and Clinical Research, Humana, Totowa, NJ.
 
Mittler, R, Lam, E, Shulaev, V, Cohen, M (1999) Signals controlling the expression of cytosolic ascorbate peroxidase during pathogen-induced programmed cell death in tobacco. Plant Mol. Biol., 39:1025-1035. PubMed. Full-text.
 
Ribnicky, DM, Shulaev, V, Raskin, I (1998) Intermediates of salicylic acid biosynthesis in tobacco. Plant Physiology, 118:565-572. PubMed. Full-text.
 
Seskar, M, Shulaev, V, Raskin, I (1998) Endogenous methyl salicylate in pathogen-inoculated tobacco plants.  Plant Physiol. 116:387-392.
 
Smirnov, S, Shulaev, V, Tumer, N (1997) Expression of pokeweed antiviral protein in transgenic plants induced virus resistance in grafted wild-type plants independently of salicylic acid accumulation and pathogenesis-related protein synthesis. Plant Physiol. 114:1113-1121. PubMed. Full-text.
 
Abad, MS, Hakimi, SM, Kaniewski, WK, Rommens, CM, Shulaev, V, Lam, E, Shah, DM (1997) Characterization of acquired resistance in lesion-mimic transgenic potato expressing bacterio-opsin. Mol. Plant Microbe Interact. 10:635-645. PubMed. Full-text.
 
Shulaev, V, Silverman, P, Raskin, I (1997) Airborne signalling by methyl salicylate in plant pathogen resistance. Nature 385:718-721.
 
Mittler, R, Shulaev, V, Seskar, M, Raskin, I, Lam, E (1996) Inhibition of programmed cell death in tobacco plants during a pathogen-induced hypersensitive response at low oxygen pressure. Plant Cell 8:1991-2001. PubMed. Full-text.
 
Leon, J, Shulaev, V, Yalpani, N, Lawton, MA, Raskin, I (1995) Benzoic acid 2-hydroxylase, a soluble monooxygenase from tobacco, catalyzes salicylic acid biosynthesis. Proc. Natl. Acad. Sci. USA 92:10413-10417. PubMed. Full-text.
 
Shulaev, V, Leon, J, Raskin, I (1995) Is salicylic acid a translocated signal of systemic acquired resistance in tobacco? Plant Cell 7:1691-1701. PubMed. Full-text.
 
Mittler, R, Shulaev, V, Lam, E (1995) Coordinated activation of programmed cell death and defense mechanisms in transgenic tobacco plants expressing a bacterial proton pump. Plant Cell 7:29-42. PubMed. Full-text.
 
Yalpani, N, Shulaev, V, Raskin, I (1993) Endogenous salicylic acid levels correlate with accumulation of pathogenesis related proteins and virus resistance in tobacco. Phytopatology 83:702-708.